| Protein ZmMADS63 | |
|---|---|
|
ZmMADS63 is a protein in the MADS family.
|
|
| Information | |
| TF Name: | ZmMADS63 |
| Species: | Maize |
| TF Family: | MADS |
| Gene Name(Synonym): | MADS63 |
| Uniprot ID: | A0A1D6PDQ1 |
| Subgenome: | 1 |
Protein ZmMADS63
ZmMADS63 is a protein in the MADS family. NOTE the "Uniprot ID" shown on the right is a placeholder for testing. The interactive structure shown is based on that id.
| Overview of domains present in v5 transcripts | ||
|---|---|---|
| PF00319 | PF01486 | |
| Zm00001eb080670_T001 |  | |
| Zm00001eb080670_T002 | |  |
Protein-DNA Interactions
Meme Logos for Maize v4 Gene IDs
| Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
|---|---|---|---|---|---|
| Zm00001d003408 | DAPseq |  |
sequence | fimo | position |
| Zm00001d003408 | DAPseq |  |
sequence | fimo | position |
| Zm00001d003408 | ChIPseq |  |
sequence | fimo | position |
| Zm00001d003408 | PChIPseq |  |
sequence | fimo | position |
| Zm00001d003409 | DAPseq |  |
sequence | fimo | position |
| Zm00001d003409 | DAPseq |  |
sequence | fimo | position |
| Zm00001d003409 | ChIPseq |  |
sequence | fimo | position |
| Zm00001d003409 | PChIPseq |  |
sequence | fimo | position |
Interactions where ZmMADS63 is the regulator
Interactions where ZmMADS63 is the target
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Zm00001eb080670_T001 from maize genome v5
Amino Acid Sequence
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MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKARELAILCDAEVGLVIFSSTGRLYEYASTSIKSVIDRYGRAKEEEHVAD
PNTELKFWQREAASLRQQLHNLQENHRQLMGQDLSGLGVKGLQNLENQLEMSICCIRTKKDQLLVDEIHELNRKGSLIQQ
DNMGLHRKVNLIRQENAELYKKLYEKEAEGEVNRDSTTPYNFVVAEGANVPIHLELNIPLQENGVEQPVAPKLGLQLNQ
MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKARELAILCDAEVGLVIFSSTGRLYEYASTSIKSVIDRYGRAKEEEHVAD
PNTELKFWQREAASLRQQLHNLQENHRQLMGQDLSGLGVKGLQNLENQLEMSICCIRTKKDQLLVDEIHELNRKGSLIQQ
DNMGLHRKVNLIRQENAELYKKLYEKEAEGEVNRDSTTPYNFVVAEGANVPIHLELNIPLQENGVEQPVAPKLGLQLNQ
MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKARELAILCDAEVGLVIFSSTGRLYEYASTSIKSVIDRYGRAKEEEHVAD
PNTELKFWQREAASLRQQLHNLQENHRQLMGQDLSGLGVKGLQNLENQLEMSICCIRTKKDQLLVDEIHELNRKGSLIQQ
DNMGLHRKVNLIRQENAELYKKLYEKEAEGEVNRDSTTPYNFVVAEGANVPIHLELNIPLQENGVEQPVAPKLGLQLNQ
MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKARELAILCDAEVGLVIFSSTGRLYEYASTSIKSVIDRYGRAKEEEHVAD
PNTELKFWQREAASLRQQLHNLQENHRQLMGQDLSGLGVKGLQNLENQLEMSICCIRTKKDQLLVDEIHELNRKGSLIQQ
DNMGLHRKVNLIRQENAELYKKLYEKEAEGEVNRDSTTPYNFVVAEGANVPIHLELNIPLQENGVEQPVAPKLGLQLNQ
MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKARELAILCDAEVGLVIFSSTGRLYEYASTSIKSVIDRYGRAKEEEHVAD
PNTELKFWQREAASLRQQLHNLQENHRQLMGQDLSGLGVKGLQNLENQLEMSICCIRTKKDQLLVDEIHELNRKGSLIQQ
DNMGLHRKVNLIRQENAELYKKLYEKEAEGEVNRDSTTPYNFVVAEGANVPIHLELNIPLQENGVEQPVAPKLGLQLNQ
MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKARELAILCDAEVGLVIFSSTGRLYEYASTSIKSVIDRYGRAKEEEHVAD
PNTELKFWQREAASLRQQLHNLQENHRQLMGQDLSGLGVKGLQNLENQLEMSICCIRTKKDQLLVDEIHELNRKGSLIQQ
DNMGLHRKVNLIRQENAELYKKLYEKEAEGEVNRDSTTPYNFVVAEGANVPIHLELNIPLQENGVEQPVAPKLGLQLNQ
MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKARELAILCDAEVGLVIFSSTGRLYEYASTSIKSVIDRYGRAKEEEHVAD
PNTELKFWQREAASLRQQLHNLQENHRQLMGQDLSGLGVKGLQNLENQLEMSICCIRTKKDQLLVDEIHELNRKGSLIQQ
DNMGLHRKVNLIRQENAELYKKLYEKEAEGEVNRDSTTPYNFVVAEGANVPIHLELNIPLQENGVEQPVAPKLGLQLNQ
MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKARELAILCDAEVGLVIFSSTGRLYEYASTSIKSVIDRYGRAKEEEHVAD
PNTELKFWQREAASLRQQLHNLQENHRQLMGQDLSGLGVKGLQNLENQLEMSICCIRTKKDQLLVDEIHELNRKGSLIQQ
DNMGLHRKVNLIRQENAELYKKLYEKEAEGEVNRDSTTPYNFVVAEGANVPIHLELNIPLQENGVEQPVAPKLGLQLNQ
| Secondary Structure Color Code | |
|---|---|
| BEND | region with high backbone curvature without specific hydrogen bonding |
| HELX_LH_PP_P | left-handed polyproline helix |
| HELX_RH_3T_P | right-handed 3-10 helix |
| HELX_RH_AL_P | right-handed alpha helix |
| HELX_RH_PI_P | right-handed pi helix |
| STRN | beta strand |
| TURN_TY1_P | type I turn |
| UNDETERMINED | no data available |
| Domains Present | |
|---|---|
| PF00319 |
|
| PF01486 |
|
| PF01486 |
|
| PF00319 |
|
| Hover here to show all domains | |
Nucleotide Sequence
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AATGGGGAGGCAAATCTGTCTCCGT...
AATGGGGAGGCAAATCTGTCTCCGTGATTTCCTTGCTAAATAAAGGAAAGGAAAGCAGCTAAACGAATGCCGACTTGCAAAGCCACCAGCAAGAGACTCCTCTCTTATCCCGTCGTCCTCTTCTCTCGCCTCCAATAATTCGTAACCCTTCTCCTTCCAGGCCGGGCTCCTGCTGGCCGGAGTTCCCATCTCCCTCTTTCCTTCTCGGTTACTATCCGTGAAGTCTGCTTGCGCCGTGTGTGCGTGTGAGACCGGACGCAGCTTAACGATGGGGCGTGGCAAGATAGTGATCCGCCGGATCGACAACTCCACGAGCCGGCAGGTGACGTTCTCCAAGCGGCGGAACGGGATCTTCAAGAAGGCAAGGGAGCTCGCCATCCTCTGCGACGCAGAGGTCGGGTTGGTCATCTTCTCCAGCACCGGTCGTCTCTATGAATACGCCAGCACAAGCATAAAGTCAGTGATTGATCGATATGGTCGAGCAAAGGAGGAGGAGCATGTAGCAGACCCCAACACAGAGCTTAAGTTCTGGCAAAGGGAGGCAGCAAGCTTGAGACAACAACTGCACAACTTGCAAGAAAATCATCGGCAGTTGATGGGACAAGATCTTTCTGGACTAGGTGTCAAGGGACTTCAAAATCTAGAAAATCAGCTAGAGATGAGCATTTGTTGCATCCGGACAAAAAAGGACCAACTCTTGGTTGACGAAATTCACGAACTGAATCGAAAGGGAAGTCTCATCCAACAAGACAACATGGGATTACACAGAAAGGTCAACCTAATTCGTCAAGAAAATGCTGAATTATATAAGAAGCTCTATGAGAAAGAAGCAGAAGGTGAAGTCAACCGAGATTCAACAACTCCGTACAACTTTGTAGTTGCAGAGGGTGCCAACGTTCCTATCCATCTTGAGCTTAATATTCCACTGCAAGAAAATGGTGTTGAGCAACCTGTGGCTCCTAAATTAGGGTTGCAATTAAATCAATGAAGACATGCAGGACATTGCCTTTGTTCTCATTGTCCTTGTAGTCTGCAACTCAAAGCAGCCTAAAATGATTGGTTGTAACAGGCCTAAAAACATAGCAAGACAAATAAAGTATGCATGCCAGAGACAGTGGCAATGGTAGTGCAAATCTATCTCAAATAACTTGTGTTATATTGAATAATCCAGCAAATGGTTTGTTTTTTACACGTTATGCAAGTTTGTTTGACCAAAATGGTATGTAACATGTACAAATTTCCAAGTGAACTTATTGAAAAAATTCTATAAAGTGTGTATCTGGAAAAT
GRMZM2G032905_T01 from maize genome v3
Amino Acid Sequence
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MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKARELAILCDAEVGLVIFSSTGRLYEYASTSIKSVIDRYGRAKEEEHVAD
PNTELK
Nucleotide Sequence
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ATGGGGCGTGGCAAGATAGTGATCC...
ATGGGGCGTGGCAAGATAGTGATCCGCCGGATCGACAACTCCACGAGCCGGCAGGTGACGTTCTCCAAGCGGCGGAACGGGATCTTCAAGAAGGCAAGGGAGCTCGCCATCCTCTGCGACGCAGAGGTCGGGTTGGTCATCTTCTCCAGCACCGGTCGTCTCTATGAATACGCCAGCACAAGCATAAAGTCAGTGATTGATCGATATGGTCGAGCAAAGGAGGAGGAGCATGTAGCAGACCCCAACACAGAGCTTAAGTAA
GRMZM2G033093_T01 from maize genome v3
Amino Acid Sequence
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MGQDLSGLGVKGLQNLENQLEMSICCIRTKKDQLLVDEIHELNRKGSLIQQDNMGLHRKVNLIRQENAELYKKLYEKEAE
GEVNRDSTTPYNFVVAEGANVPIHLELNIPLQENGVEQPVAPKLGLQLNQ
Nucleotide Sequence
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GTTTTTCGGGTCATGTTGCAGCATC...
GTTTTTCGGGTCATGTTGCAGCATCCCATGTCTCACCATGAGAAGAAACGGCAAATTGCCCGTCGGATGAACAATGGGCAATTTTTGGTGGTTGCCATCGTTCTACGTAGTTGGACTTTTGGTGGTTGCCATCGTTCTACAAAGGCTCAGACAGATTTAACCAAATTAGGCCAAGGTTTACAGCTTAGAACCAAGATAGGGTAGGAATGCCATTTTTTTCCTGCCTACATCGTACCATCTCTTGTAGGACTTAAACTGAAGCCCTTTCATCCAAGGTCTGGTGACTCTGGTCCGATAGAATATGCCATCTTTTCTAGGATCAGAGTATACCCTTCTGTACTCTGGAATTGCTTAGACAGCTCTGAAGATTATCGGAAAACAAAGGTTAGTGCTGCCCGCAGGACGCAGACAACTGGTCTACATCGAAGTCATCCTGACATAAGTTATTTATAGAGAAGATAAAATACCAAACAAATATGCAGGACTAAATTAGTTTGTGTGGGTTATTTCCTCTTTAAAGATCCAAATGGTCAAGTTTTTATATAAACTATCCCATTAGCAAAGTCAGCATACACCTTAATACAGTCAAATTTCATTTGCAAAATAGAAAACAATGTATGGTAGGATTTACGGTTTCAAAAAAAGTGGCTGCAAATGTGCAATTAATACAAACTAGTACTCTGAACATTAAGCACAAAACACAGATGGTTCATATGCCAAAAGTGGCCCTCCAAGCAATTTTTTTTTTACTGGAGGAAGCCAAAACCTCAGGCTAATTTCAACCCTGAAATACAAACATCCTGAGACAAAAGTGATAGGAGATACGAAAAGACACAGTGGTCAGCAGGAAACACAGTACCTGGTCTAAGCTCCCATAATCCCATCCTCTGAACTGGAGAGATCTTGGAAGATCAGCAGCCATACTTCAGTCTATAGTCCAAGAATTTATATTGAACCTTTGAAGATTATTATAGCCTTTAGCTAAATCCTAAAAAGGTTAAAACCATCAGCAGTTTCATGCATAAGCTTGTTCCAGCAAGTTCATCACCAATCTCTGACTTGTCCTGTTTCGTCCCTCAAGACGCATGCGTCATTAGGATTTCACATGCTCTGGGATTATTTAGCTCCATTGAGATGTCAGCACTTGTATGTGAGAAGTGTAGATAACAGCAATAAATTACATAATCAAAGCATGCCAATACACGTCCAGCTTCATATCATTAGATAAAATTGTTTCTTAATTTAAGTATGTGTCTGAAATAAAATATCAACACAAGATGAAGAGGTTTTGTATTTGCCTTAATTGAGTTCATACAGTCATTTCTCGTCTTGTTATTTTGTACTCCCTCCGTCCCAAAATATTAGTCGTTTTAGCATTTTACTAGATTCATACAATACTTAATGTATGTGTTTTATATTATATATAGATTCATTGTCATTCATTTAAATATAGACATAATTTCAAGGGCTAAAACGACTAATATTTTGGGACGGAGGGAGTATATAATATCATTTCTTGATTCAAACAATAGCATGCCAACATATCTACTTCAGTTATTTCATAAAGGCATACAATTTACTCCGCTAAAAGTTCCACCACTTATTAGCAACTTTTTATATCAGCAACCTTTTGGATTCTCTGGGCGTGGCATTACTTAACTGTGCTTTCACATTCAATAGTTCTGGCAAAGGGAGGCAGCAAGCTTGAGACAACAACTGCACAACTTGCAAGAAAATCATCGGCAGTTGATGGGACAAGATCTTTCTGGACTAGGTGTCAAGGGACTTCAAAATCTAGAAAATCAGCTAGAGATGAGCATTTGTTGCATCCGGACAAAAAAGGACCAACTCTTGGTTGACGAAATTCACGAACTGAATCGAAAGGGAAGTCTCATCCAACAAGACAACATGGGATTACACAGAAAGGTCAACCTAATTCGTCAAGAAAATGCTGAATTATATAAGAAGCTCTATGAGAAAGAAGCAGAAGGTGAAGTCAACCGAGATTCAACAACTCCGTACAACTTTGTAGTTGCAGAGGGTGCCAACGTTCCTATCCATCTTGAGCTTAATATTCCACTGCAAGAAAATGGTGTTGAGCAACCTGTGGCTCCTAAATTAGGGTTGCAATTAAATCAATGAAGACATGCAGGACATTGCCTTTGTTCTCATTGTCCTTGTAGTCTGCAACTCAAAGCAGCCTAAAATGATTGGTTGTAACAGGCCTAAAAACATAGCAAGACAAATAAAGTATGCATGCCAGAGACAGTGGCAATGGTAGTGCAAATCTATCTCAAATAACTTGTGTTATATTGAATAATCCAGCAAATGGTTTGTTTTTTACACGTTATGCAAGTTTGTTTG
Zm00001d003408_T001 from maize genome v4
Amino Acid Sequence
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MEEGGGAVSRTLGDEEDKAAERKRQLMGQDLSGLGVKGLQNLENQLEMSICCIRTKKDQLLVDEIHELNRKGSLIQQDNM
GLHRKVNLIRQENAELYKKLYEKEAEGEVNRDSTTPYNFVVAEGANVPIHLELNIPLQENGVEQPVAPKLG
Nucleotide Sequence
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ATGGAGGAAGGAGGTGGCGCTGTGA...
ATGGAGGAAGGAGGTGGCGCTGTGAGCAGGACACTTGGCGACGAGGAAGACAAAGCAGCAGAGAGGAAGAGGCAGTTGATGGGACAAGATCTTTCTGGACTAGGTGTCAAGGGACTTCAAAATCTAGAAAATCAGCTAGAGATGAGCATTTGTTGCATCCGGACAAAAAAGGACCAACTCTTGGTTGACGAAATTCACGAACTGAATCGAAAGGGAAGTCTCATCCAACAAGACAACATGGGATTACACAGAAAGGTCAACCTAATTCGTCAAGAAAATGCTGAATTATATAAGAAGCTCTATGAGAAAGAAGCAGAAGGTGAAGTCAACCGAGATTCAACAACTCCGTACAACTTTGTAGTTGCAGAGGGTGCCAACGTTCCTATCCATCTTGAGCTTAATATTCCACTGCAAGAAAATGGTGTTGAGCAACCTGTGGCTCCTAAATTAGGGTAA
Zm00001d003409_T001 from maize genome v4
Amino Acid Sequence
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MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKARELAILCDAEVGLVIFSSTGRLYEYASTSIKSVIDRYGRAKEEEHVAD
PNTELKN
Nucleotide Sequence
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GGGGAGGCAAATCTGTCTCCGTGAT...
GGGGAGGCAAATCTGTCTCCGTGATTTCCTTGCTAAATAAAGGAAAGGAAAGCAGCTAAACGAATGCCGACTTGCAAAGCCACCAGCAAGAGACTCCTCTCTTATCCCGTCGTCCTCTTCTCTCGCCTCCAATAATTCGTAACCCTTCTCCTTCCAGGCCGGGCTCCTGCTGGCCGGAGTTCCCATCTCCCTCTTTCCTTCTCGGTTACTATCCGTGAAGTCTGCTTGCGCCGTGTGTGCGTGTGAGACCGGACGCAGCTTAACGATGGGGCGTGGCAAGATAGTGATCCGCCGGATCGACAACTCCACGAGCCGGCAGGTGACGTTCTCCAAGCGGCGGAACGGGATCTTCAAGAAGGCAAGGGAGCTCGCCATCCTCTGCGACGCAGAGGTCGGGTTGGTCATCTTCTCCAGCACCGGTCGTCTCTATGAATACGCCAGCACAAGCATAAAGTCAGTGATTGATCGATATGGTCGAGCAAAGGAGGAGGAGCATGTAGCAGACCCCAACACAGAGCTTAAGAATTAG
Zm00001eb080670_T002 from maize genome v5
Amino Acid Sequence
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MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKARELAILCDAEVGLVIFSSTGRLYEYASTSIKSVIDRYGRAKEEEHVAD
PNTELKVRH
Nucleotide Sequence
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ATGCCGACTTGCAAAGCCACCAGCA...
ATGCCGACTTGCAAAGCCACCAGCAAGAGACTCCTCTCTTATCCCGTCGTCCTCTTCTCTCGCCTCCAATAATTCGTAACCCTTCTCCTTCCAGGCCGGGCTCCTGCTGGCCGGAGTTCCCATCTCCCTCTTTCCTTCTCGGTTACTATCCGTGAAGTCTGCTTGCGCCGTGTGTGCGTGTGAGACCGGACGCAGCTTAACGATGGGGCGTGGCAAGATAGTGATCCGCCGGATCGACAACTCCACGAGCCGGCAGGTGACGTTCTCCAAGCGGCGGAACGGGATCTTCAAGAAGGCAAGGGAGCTCGCCATCCTCTGCGACGCAGAGGTCGGGTTGGTCATCTTCTCCAGCACCGGTCGTCTCTATGAATACGCCAGCACAAGCATAAAGTCAGTGATTGATCGATATGGTCGAGCAAAGGAGGAGGAGCATGTAGCAGACCCCAACACAGAGCTTAAGGTACGCCATTAAAAGTGATAGCAACAAAATTTAGCTAAATATTGATCAATTCCATCATGTTGTTTTGCAGTAACGCTATGTTCTTGATTTTTCTTATGTTCCTTAGAATTAGAATTTTCTATTAACAATTTAGCAAATAAAGATGATAATAAAGAGAGTGATAAATC
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